marrink-lab / bentopy

Packs stuff in boxes
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Solvate? #11

Open ma3ke opened 5 months ago

ma3ke commented 5 months ago

Let us spawn a thread here to discuss anything related to solvation of bentopy-packed systems. Since these systems can be very large, it may be necessary to gather some specific information on solvating such systems.

Moreover, it can be worth considering setting up a custom solvation pipeline. As a subcommand, maybe? bentopy solvate has a nice ring to it, right?

Of course, I have my silly little trivial solvate project lying around. If it turns out we really do need a very memory-efficient (by design) and fast solvation method, we can consider using that.

But most likely, that won't be necessary!