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mastrof
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Bactos.jl
Agent-based modeling framework for bacterial behavior, based on Agents.jl
MIT License
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TagBot trigger issue
#82
JuliaTagBot
closed
1 year ago
1
Evaluate encounter rates using previous position instead of next one
#81
mastrof
opened
1 year ago
0
Add example encounter rates vs size
#80
mastrof
opened
1 year ago
0
Encounters
#79
mastrof
closed
1 year ago
2
Depend on the lighter `DiffEqBase` (instead of `OrdinaryDiffEq`) if possible.
#78
mastrof
opened
1 year ago
0
New model interface
#77
mastrof
closed
1 year ago
0
Revisit model interface
#76
mastrof
closed
1 year ago
0
Add compat entry for julia
#75
mastrof
closed
1 year ago
1
Don't initialize ODE `integrator` automatically
#74
mastrof
closed
1 year ago
1
Remove typed global consts `dummy_ODEProblem` and `dummy_integrator`
#73
mastrof
closed
1 year ago
0
Registration
#72
mastrof
opened
1 year ago
1
Optimization and development of a benchmark suite.
#71
mastrof
opened
1 year ago
0
Encounters
#70
mastrof
closed
1 year ago
1
Interface for evaluation of encounter rates.
#69
mastrof
closed
1 year ago
1
New `MotileState` and `TwoState` types
#68
mastrof
closed
1 year ago
1
Update CI workflow to skip draft PRs
#67
mastrof
closed
1 year ago
0
Simplify the cumbersome `TwoStates` functionality
#66
mastrof
closed
1 year ago
0
Extended analysis toolkit.
#65
mastrof
opened
1 year ago
0
Timekeeping
#64
mastrof
closed
1 year ago
1
Improved interface with `OrdinaryDiffEq.jl` for seamless integration in standard use cases.
#63
mastrof
opened
1 year ago
0
Improved constructors for all `AbstractMicrobe` subtypes and `ABM` to minimize verbosity and boilerplate code.
#62
mastrof
opened
1 year ago
1
Rename all `MicrobeBrownBerg` and `MicrobeBrumley` to `BrownBerg` and `Brumley`
#61
mastrof
closed
1 year ago
1
Roadmap to v1.0.0
#60
mastrof
opened
1 year ago
0
CompatHelper: add new compat entry for Distributions at version 0.25, (keep existing compat)
#59
github-actions[bot]
closed
1 year ago
0
CompatHelper: add new compat entry for OrdinaryDiffEq at version 6, (keep existing compat)
#58
github-actions[bot]
closed
1 year ago
0
CompatHelper: add new compat entry for CellListMap at version 0.8, (keep existing compat)
#57
github-actions[bot]
closed
1 year ago
0
CompatHelper: add new compat entry for Rotations at version 1, (keep existing compat)
#56
github-actions[bot]
closed
1 year ago
0
CompatHelper: add new compat entry for StaticArrays at version 1, (keep existing compat)
#55
github-actions[bot]
closed
1 year ago
0
CompatHelper: add new compat entry for Agents at version 5, (keep existing compat)
#54
github-actions[bot]
closed
1 year ago
0
CompatHelper: add new compat entry for FiniteDifferences at version 0.12, (keep existing compat)
#53
github-actions[bot]
closed
1 year ago
0
Reset workflows
#52
mastrof
closed
1 year ago
0
Obstacles - Pathfinder
#51
mastrof
closed
1 year ago
2
Neighbors
#50
mastrof
closed
1 year ago
0
Rename package "BacteriaBasedModels" -> "Bactos.jl"
#49
mastrof
closed
1 year ago
0
Improve model initialisation
#48
mastrof
closed
1 year ago
1
Improve model initialisation
#47
mastrof
closed
1 year ago
0
Fix `polar_backward` angle in `RunReverseFlick`
#46
mastrof
closed
1 year ago
0
Fix polar_backward angle in `RunReverseFlick`
#45
mastrof
closed
1 year ago
0
Add badges on readme
#44
mastrof
closed
1 year ago
0
Fix analysis examples
#43
mastrof
closed
1 year ago
0
Remove unnecessary allocation in 3D rotation
#42
mastrof
closed
1 year ago
0
Mixed species models
#41
mastrof
closed
1 year ago
0
Default `Xie` and `XieNoisy` motility to `RunReverseFlick`
#40
mastrof
closed
1 year ago
0
Fix rotational diffusion
#39
mastrof
closed
1 year ago
0
Update docs page
#38
mastrof
closed
1 year ago
1
Increase `isapprox` tolerance on msd tests
#37
mastrof
closed
1 year ago
0
Workflow dispatch
#36
mastrof
closed
1 year ago
0
Fix random speed generation in type constructors
#35
mastrof
closed
1 year ago
1
Fix reorientation distribution in `rotational_diffusion!`
#34
mastrof
closed
1 year ago
0
Fix random speed generation in type constructors
#33
mastrof
closed
1 year ago
0
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