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matthiaskoenig
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sbmlutils
Python utilities for SBML
https://sbmlutils.readthedocs.io/en/stable/
GNU Lesser General Public License v3.0
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Update examples and tests to handle ultra scrict unit testing
#449
matthiaskoenig
opened
1 month ago
1
Fix failing docs
#448
matthiaskoenig
opened
1 month ago
0
Update npm dependencies and packages for sbml4humans
#447
matthiaskoenig
opened
1 month ago
0
additional sbml4humans examples
#446
matthiaskoenig
closed
1 month ago
0
Replace py2cytoscape with py4cytoscape
#445
matthiaskoenig
closed
1 month ago
0
Fix model_config warning pydantic
#444
matthiaskoenig
closed
1 month ago
0
Parser formula definition uses `ast` before assignment.
#443
castagninojose
closed
1 month ago
1
sbml4humans api unresponsive
#442
matthiaskoenig
closed
1 month ago
3
Serialization to diffrax
#441
matthiaskoenig
opened
4 months ago
3
Issues in ODE serialization with AssignmentRules on species
#440
matthiaskoenig
closed
1 month ago
0
Support python 3.12
#439
matthiaskoenig
closed
7 months ago
0
InitialAssignments not supported in code generator
#438
matthiaskoenig
opened
7 months ago
0
Add names to the generated ode systems in odefac
#437
matthiaskoenig
closed
1 month ago
0
Create sbml4humans in separate repository
#436
matthiaskoenig
opened
11 months ago
0
Support additional units such as pascal or watt
#435
matthiaskoenig
closed
1 year ago
0
pydantic error
#434
shoepfl
closed
1 year ago
4
Events do not list assignments in sbml4humans
#433
matthiaskoenig
opened
1 year ago
0
Not parsing character codes in ontology links?
#432
jpsluka
closed
1 month ago
5
Fix #430, support for python 3.11
#431
matthiaskoenig
closed
1 year ago
0
Python 3.11 support
#430
matthiaskoenig
closed
1 year ago
0
Bring interpolation back with documentation
#429
matthiaskoenig
closed
1 month ago
1
Implement support for spatial models
#428
matthiaskoenig
opened
2 years ago
0
Rules
#427
matthiaskoenig
closed
2 years ago
1
Improve access to objects via sid and metaid
#426
matthiaskoenig
opened
2 years ago
0
Improve printing of objects
#425
matthiaskoenig
closed
1 month ago
0
Do not set default timestamps
#424
matthiaskoenig
closed
1 month ago
0
UncertSpan and UncertParameter must be SBase
#423
matthiaskoenig
opened
2 years ago
0
Better handling of packages
#422
matthiaskoenig
closed
2 years ago
0
Support fbc version 2 & version3
#421
matthiaskoenig
opened
2 years ago
0
Data structure for validation options with support for additional options
#420
matthiaskoenig
closed
2 years ago
0
Ensure sbmlinfo is working on model import
#419
matthiaskoenig
closed
1 month ago
0
Simplify model creation options
#418
matthiaskoenig
closed
2 years ago
0
Support merging of notes in different formats
#417
matthiaskoenig
opened
2 years ago
0
Support ModelHistory on SBase
#416
matthiaskoenig
closed
1 year ago
1
Merge SBMLInfo and model parser (extend/update the JSON for report)
#415
matthiaskoenig
opened
2 years ago
0
How to include scientific e-notation (e.g 2 * 10^-5) for parameter values?
#414
alifarhat40
closed
2 years ago
1
Support for variable stoichiometries
#413
matthiaskoenig
closed
2 years ago
0
Refactor equation handling
#412
matthiaskoenig
closed
2 years ago
0
Support antimony model import/export
#411
matthiaskoenig
closed
2 years ago
0
Validation warnings/errors should be available via sbml4humans report
#410
matthiaskoenig
opened
2 years ago
0
Support for Algebraic rules
#409
matthiaskoenig
closed
2 years ago
0
Document model creation with examples
#408
matthiaskoenig
opened
2 years ago
0
Changes for 0.7.6 release
#407
matthiaskoenig
closed
2 years ago
0
Distinguish InitialAssignment from AssignmentRule in sbml4humans report
#406
matthiaskoenig
opened
2 years ago
0
Issue warning if object with `constant=False` has no assignment via rule/event/...
#405
matthiaskoenig
closed
1 month ago
0
Changes for 0.7.5
#404
matthiaskoenig
closed
2 years ago
0
Twitter action for release
#403
matthiaskoenig
closed
2 years ago
0
Update pymetadata>=0.2.9
#402
matthiaskoenig
closed
2 years ago
0
Fix failing tests
#401
matthiaskoenig
closed
2 years ago
0
Replace format expressions with fstrings
#400
matthiaskoenig
closed
2 years ago
0
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