mdozmorov / genome_runner

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DNAse imputed extra files #75

Closed mdozmorov closed 9 years ago

mdozmorov commented 9 years ago

Now, DNase imputed narrowPeak and gappedPeak contain under Group/EID two files. E.g. E033-DNase_imputed.bed.gz E033-DNase_imputed_gappedPeak.bed.gz [cellType]-[factor_factor]-[source] # use gPk instead of gappedPeak E033-DNase_gPk-imputed

They are the same, except the latter has 4th column with gPk. We should keep the 'E033-DNase_imputed_gappedPeak.bed.gz' name, as it is unique identifier.

lkscara commented 9 years ago

Download and use E033-DNase_imputed.bed.gz but rename to E033-DNase_gPk-imputed.bed.gz Do NOT use E033-DNase_imputed_gappedPeak.bed.gz