Now, DNase imputed narrowPeak and gappedPeak contain under Group/EID two files. E.g.
E033-DNase_imputed.bed.gz
E033-DNase_imputed_gappedPeak.bed.gz
[cellType]-[factor_factor]-[source] # use gPk instead of gappedPeak
E033-DNase_gPk-imputed
They are the same, except the latter has 4th column with gPk. We should keep the 'E033-DNase_imputed_gappedPeak.bed.gz' name, as it is unique identifier.
Now, DNase imputed narrowPeak and gappedPeak contain under Group/EID two files. E.g. E033-DNase_imputed.bed.gz E033-DNase_imputed_gappedPeak.bed.gz [cellType]-[factor_factor]-[source] # use gPk instead of gappedPeak E033-DNase_gPk-imputed
They are the same, except the latter has 4th column with gPk. We should keep the 'E033-DNase_imputed_gappedPeak.bed.gz' name, as it is unique identifier.