mehta-lab / VisCy

computer vision models for single-cell phenotyping
https://pypi.org/project/viscy/
BSD 3-Clause "New" or "Revised" License
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explainability tools for representation #157

Open mattersoflight opened 2 months ago

mattersoflight commented 2 months ago

We should extend the explainability tools developed for robust virtual staining to representation learning. I suggest the following:

ziw-liu commented 2 months ago

Effective receptive field of a chosen embedding dimension.

The embedding is the global average pooling of the deepest feature map, so by definition its ERF is the entire input image.

ziw-liu commented 1 week ago

Related: #170, #162.