merenlab / anvio

An analysis and visualization platform for 'omics data
http://merenlab.org/software/anvio
GNU General Public License v3.0
444 stars 145 forks source link

anvi-interacitve fails to visualize a tree #709

Closed ShaiberAlon closed 6 years ago

ShaiberAlon commented 6 years ago

this is what I try to do: http://merenlab.org/2016/02/27/the-anvio-interactive-interface/#11-newick-tree

And this is the error I get:

anvi-interactive --manual -t semi-core-phylogeny.newick -p manual-profile.db --title TM7-pylogeny
Interactive mode .............................: manual

File/Path Error: Your tree doesn't seem to be properly formatted. Here is what ETE had to say
                 about this: 'Unexpected newick format 'layer_orders        data_type
                 data_valuesemi_core_phyloge' '. Pity :/
ShaiberAlon commented 6 years ago

This is my fault. sorry. I didn't realize I need to just have the newick and nothing else.