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meyer-lab / tHMM

A general Python framework for using hidden Markov models on binary trees or cell lineage trees.
https://asmlab.org
MIT License
10 stars 1 forks source link

Order states #886

Closed Farnazmdi closed 2 years ago

Farnazmdi commented 2 years ago

This re-orders the states based on their gamma_shape value. I figured this parameter is the same for all conditions, so probably a consistent element to use for re-ordering.

Please let me know if you don't agree.

codecov[bot] commented 2 years ago

Codecov Report

Merging #886 (5a32cbc) into master (1951925) will decrease coverage by 0.74%. The diff coverage is 5.00%.

Impacted file tree graph

@@            Coverage Diff             @@
##           master     #886      +/-   ##
==========================================
- Coverage   81.29%   80.55%   -0.75%     
==========================================
  Files          26       26              
  Lines        2160     2180      +20     
==========================================
  Hits         1756     1756              
- Misses        404      424      +20
Flag Coverage Δ
unittests 80.55% <5.00%> (-0.75%) :arrow_down:

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Impacted Files Coverage Δ
lineage/Analyze.py 71.69% <5.00%> (-15.52%) :arrow_down:
lineage/states/stateCommon.py 93.33% <0.00%> (-1.12%) :arrow_down:

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