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mfvalin / modeltools

modeling tools for grid based numerical models
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Issues when compiling atm.Abs #1

Closed guziy closed 6 years ago

guziy commented 8 years ago

Hi:

I am not sure if this is a real problem, but I am not able to compile test executables using the latest version of mgi_shm on guillimin. I would like to test it in simple conditions before upgrading the version used in the model:

$ make
s.f90 -mpi -DMODEL -DATM f_mgi_test.F90 mgilib2.o -o atm.Abs
USING: /sb/software/areas/armnssm/ssm-domains-base/tools/dev-tools/code-tools_1.0_all/include/Linux_x86-64_pgi11xx/Pre_Compiler_rules
USING: /sb/software/areas/armnssm/ssm-domains-base/tools/dev-tools/code-tools_1.0_all/include/Linux_x86-64_pgi11xx/Common_Compiler_rules
Compiler Rules applied for Linux PGI version 11
USING: /sb/software/areas/armnssm/ssm-domains-base/tools/dev-tools/code-tools_1.0_all/include/Linux_x86-64_pgi11xx/Pre_Compiler_rules
USING: /sb/software/areas/armnssm/ssm-domains-base/tools/dev-tools/code-tools_1.0_all/include/Linux_x86-64_pgi11xx/Common_Compiler_rules
Compiler Rules applied for Linux PGI version 11
f_mgi_test.F90:
/sb/software/areas/armnssm/ssm-domains-base/tools/mpi-tools-el6/openmpi_1.4.4_linux26-x86-64/lib/libmpi.so: undefined reference to `ibv_reg_xrc_rcv_qp@IBVERBS_1.1'
/sb/software/areas/armnssm/ssm-domains-base/tools/mpi-tools-el6/openmpi_1.4.4_linux26-x86-64/lib/libmpi.so: undefined reference to `ibv_close_xrc_domain@IBVERBS_1.1'
/sb/software/areas/armnssm/ssm-domains-base/tools/mpi-tools-el6/openmpi_1.4.4_linux26-x86-64/lib/libmpi.so: undefined reference to `ibv_unreg_xrc_rcv_qp@IBVERBS_1.1'
/sb/software/areas/armnssm/ssm-domains-base/tools/mpi-tools-el6/openmpi_1.4.4_linux26-x86-64/lib/libmpi.so: undefined reference to `ibv_open_xrc_domain@IBVERBS_1.1'
/sb/software/areas/armnssm/ssm-domains-base/tools/mpi-tools-el6/openmpi_1.4.4_linux26-x86-64/lib/libmpi.so: undefined reference to `ibv_modify_xrc_rcv_qp@IBVERBS_1.1'
/sb/software/areas/armnssm/ssm-domains-base/tools/mpi-tools-el6/openmpi_1.4.4_linux26-x86-64/lib/libmpi.so: undefined reference to `ibv_create_xrc_rcv_qp@IBVERBS_1.1'
/sb/software/areas/armnssm/ssm-domains-base/tools/mpi-tools-el6/openmpi_1.4.4_linux26-x86-64/lib/libmpi.so: undefined reference to `ibv_create_xrc_srq@IBVERBS_1.1'
/sb/software/areas/armnssm/ssm-domains-base/tools/mpi-tools-el6/openmpi_1.4.4_linux26-x86-64/lib/libmpi.so: undefined reference to `ibv_query_xrc_rcv_qp@IBVERBS_1.1'
make: *** [atm.Abs] Erreur 2

Thanks

mfvalin commented 8 years ago

. s.ssmuse.dot dev/pgi-11-s permet un build (ca utilise openmpi du systeme) nos vieilles librairies openmpi sont probablement proches de la retraite :-)

[valin@lg-1r17-n03 mgilib_shm]$ . s.ssmuse.dot dev/pgi-11-s s.ssmuse.dot dev/pgi-11-s Global tag values: BUNDLE PATH=@pgi-11-s USING SHORTCUT /sb/software/areas/armnssm/ssm-domains-base/setup/v_001/dot-profile-setup_1.0_multi/notshared/data/ssm_domains/ftn/pgi-11-s.sh BUNDLE PATH=@pgi-11-s USING SHORTCUT /sb/software/areas/armnssm/ssm-domains-base/setup/v_001/dot-profile-setup_1.0_multi/notshared/data/ssm_domains/ftn/openmpi-1.6.3.sh INFO: setting compiling architecture to 'Linux_x86-64/pgi11xx-s' INFO: module add pgi/11.7 MODULEPATH=/software/CentOS-6/tools/Modules/3.2.9/modulefiles:/home/valin/modulefiles/:/home/armnssm/modulefiles/ INFO: module add openmpi/1.4.3-pgi MODULEPATH=/software/CentOS-6/tools/Modules/3.2.9/modulefiles:/home/valin/modulefiles/:/home/armnssm/modulefiles/ BUNDLE PATH=@pgi-11-s@base USING cache for DOMAIN /sb/software/areas/armnssm/ssm-domains-base/tools/run-tools BUNDLE PATH=@pgi-11-s@base USING cache for DOMAIN /sb/software/areas/armnssm/ssm-domains-base/tools/dev-tools BUNDLE PATH=@pgi-11-s@base USING cache for DOMAIN /sb/software/areas/armnssm/ssm-domains-base/libs/librmn-dev BUNDLE PATH=@pgi-11-s@base USING SHORTCUT /sb/software/areas/armnssm/ssm-domains-base/setup/v_001/dot-profile-setup_1.0_multi/notshared/data/ssm_domains/model_data.sh BUNDLE PATH=@pgi-11-s@base USING SHORTCUT /sb/software/areas/armnssm/ssm-domains-base/setup/v_001/dot-profile-setup_1.0_multi/notshared/data/ssm_domains/rpn_templates.sh [valin@lg-1r17-n03 mgilib_shm]$ make clean rm -f mgilib2.o atm.Abs oce.Abs mgi_shm.Abs mpi.Abs [valin@lg-1r17-n03 mgilib_shm]$ make s.cc -I. -c -DWITHOUT_GOSSIP -O 2 mgilib2.c -o mgilib2.o USING: /sb/software/areas/armnssm/ssm-domains-base/tools/dev-tools/code-tools_1.0_all/include/Linux_x86-64/pgi11xx-s/Pre_Compiler_rules USING: /sb/software/areas/armnssm/ssm-domains-base/tools/dev-tools/code-tools_1.0_all/include/Linux_x86-64/pgi11xx-s/Common_Compiler_rules Compiler Rules applied for Linux PGI version 11 s.f90 -mpi -DMODEL -DATM f_mgi_test.F90 mgilib2.o -o atm.Abs USING: /sb/software/areas/armnssm/ssm-domains-base/tools/dev-tools/code-tools_1.0_all/include/Linux_x86-64/pgi11xx-s/Pre_Compiler_rules USING: /sb/software/areas/armnssm/ssm-domains-base/tools/dev-tools/code-tools_1.0_all/include/Linux_x86-64/pgi11xx-s/Common_Compiler_rules Compiler Rules applied for Linux PGI version 11 f_mgi_test.F90: s.f90 -mpi -DMODEL -DOCE f_mgi_test.F90 mgilib2.o -o oce.Abs USING: /sb/software/areas/armnssm/ssm-domains-base/tools/dev-tools/code-tools_1.0_all/include/Linux_x86-64/pgi11xx-s/Pre_Compiler_rules USING: /sb/software/areas/armnssm/ssm-domains-base/tools/dev-tools/code-tools_1.0_all/include/Linux_x86-64/pgi11xx-s/Common_Compiler_rules Compiler Rules applied for Linux PGI version 11 f_mgi_test.F90: s.f90 f_mgi_test.F90 mgilib2.o -o test.Abs USING: /sb/software/areas/armnssm/ssm-domains-base/tools/dev-tools/code-tools_1.0_all/include/Linux_x86-64/pgi11xx-s/Pre_Compiler_rules USING: /sb/software/areas/armnssm/ssm-domains-base/tools/dev-tools/code-tools_1.0_all/include/Linux_x86-64/pgi11xx-s/Common_Compiler_rules Compiler Rules applied for Linux PGI version 11 f_mgi_test.F90: s.f90 -mpi -DMODEL f_mgi_test.F90 mgilib2.o -o mpi.Abs USING: /sb/software/areas/armnssm/ssm-domains-base/tools/dev-tools/code-tools_1.0_all/include/Linux_x86-64/pgi11xx-s/Pre_Compiler_rules USING: /sb/software/areas/armnssm/ssm-domains-base/tools/dev-tools/code-tools_1.0_all/include/Linux_x86-64/pgi11xx-s/Common_Compiler_rules Compiler Rules applied for Linux PGI version 11 f_mgi_test.F90: s.cc -I. -O 2 -Dmgi_shm=main mgi_shm.c -o mgi_shm.Abs USING: /sb/software/areas/armnssm/ssm-domains-base/tools/dev-tools/code-tools_1.0_all/include/Linux_x86-64/pgi11xx-s/Pre_Compiler_rules USING: /sb/software/areas/armnssm/ssm-domains-base/tools/dev-tools/code-tools_1.0_all/include/Linux_x86-64/pgi11xx-s/Common_Compiler_rules Compiler Rules applied for Linux PGI version 11

Michel Valin analyste de l'informatique

On 16-02-25 01:35 PM, Huziy Oleksandr (Sasha) wrote:

Hi:

I am not sure if this is a real problem, but I am not able to compile test executables using the latest version of mgi_shm on guillimin. I would like to test it in simple conditions before upgrading the version used in the model:

|$ make s.f90 -mpi -DMODEL -DATM f_mgi_test.F90 mgilib2.o -o atm.Abs USING: /sb/software/areas/armnssm/ssm-domains-base/tools/dev-tools/code-tools_1.0_all/include/Linux_x86-64_pgi11xx/Pre_Compiler_rules USING: /sb/software/areas/armnssm/ssm-domains-base/tools/dev-tools/code-tools_1.0_all/include/Linux_x86-64_pgi11xx/Common_Compiler_rules Compiler Rules applied for Linux PGI version 11 USING: /sb/software/areas/armnssm/ssm-domains-base/tools/dev-tools/code-tools_1.0_all/include/Linux_x86-64_pgi11xx/Pre_Compiler_rules USING: /sb/software/areas/armnssm/ssm-domains-base/tools/dev-tools/code-tools_1.0_all/include/Linux_x86-64_pgi11xx/Common_Compiler_rules Compiler Rules applied for Linux PGI version 11 f_mgi_test.F90: /sb/software/areas/armnssm/ssm-domains-base/tools/mpi-tools-el6/openmpi_1.4.4_linux26-x86-64/lib/libmpi.so: undefined reference to ibv_reg_xrc_rcv_qp@IBVERBS_1.1' /sb/software/areas/armnssm/ssm-domains-base/tools/mpi-tools-el6/openmpi_1.4.4_linux26-x86-64/lib/libmpi.so: undefined reference toibv_close_xrc_domain@IBVERBS_1.1' /sb/software/areas/armnssm/ssm-domains-base/tools/mpi-tools-el6/openmpi_1.4.4_linux26-x86-64/lib/libmpi.so: undefined reference to ibv_unreg_xrc_rcv_qp@IBVERBS_1.1' /sb/software/areas/armnssm/ssm-domains-base/tools/mpi-tools-el6/openmpi_1.4.4_linux26-x86-64/lib/libmpi.so: undefined reference toibv_open_xrc_domain@IBVERBS_1.1' /sb/software/areas/armnssm/ssm-domains-base/tools/mpi-tools-el6/openmpi_1.4.4_linux26-x86-64/lib/libmpi.so: undefined reference to ibv_modify_xrc_rcv_qp@IBVERBS_1.1' /sb/software/areas/armnssm/ssm-domains-base/tools/mpi-tools-el6/openmpi_1.4.4_linux26-x86-64/lib/libmpi.so: undefined reference toibv_create_xrc_rcv_qp@IBVERBS_1.1' /sb/software/areas/armnssm/ssm-domains-base/tools/mpi-tools-el6/openmpi_1.4.4_linux26-x86-64/lib/libmpi.so: undefined reference to ibv_create_xrc_srq@IBVERBS_1.1' /sb/software/areas/armnssm/ssm-domains-base/tools/mpi-tools-el6/openmpi_1.4.4_linux26-x86-64/lib/libmpi.so: undefined reference toibv_query_xrc_rcv_qp@IBVERBS_1.1' make: *** [atm.Abs] Erreur 2 |

Thanks

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