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mhammell-laboratory / TEtranscripts

A package for including transposable elements in differential enrichment analysis of sequencing datasets.
http://hammelllab.labsites.cshl.edu/software/#TEtranscripts
GNU General Public License v3.0
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Does TEtranscripts support Windows? #202

Closed Ranxuqing closed 1 month ago

Ranxuqing commented 2 months ago

Hi Oliver， I would like to confirm whether TEtranscripts supports Windows operating systems. I've noticed that the platforms mentioned in the setup.py file are Linux and MacOS, yet I received an affirmative response from ChatGPT. Additionally, I encountered issues while installing pysam.

  I am eagerly awaiting your clarification on this matter. Thank you in advance for your assistance.

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olivertam commented 2 months ago

Hi,

Thank you for your interest in the software. TEtranscripts was designed for a Unix-based OS (e.g. Mac OS and Linux). It was not designed natively for Windows. We would recommend trying something like cygwin to make a Linux virtual environment to install/use TEtranscripts If you use pip install TEtranscripts, it should hopefully install the prerequisites along with our software.

Thanks.

Ranxuqing commented 2 months ago

Thanks for your response and suggestions.

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