This update simplifies and fixes the phyloseq process.
We got rid of the --no-tree and --tax-columns options.
To generate a tree for phyloseq, use the --tree option.
We now just include all columns in the taxonomy table, and assume that the first column is the OTU/zOTU id.
We also got rid of the --asign-taxonomy alias option.
This update simplifies and fixes the phyloseq process. We got rid of the
--no-treeand--tax-columnsoptions. To generate a tree for phyloseq, use the--treeoption. We now just include all columns in the taxonomy table, and assume that the first column is the OTU/zOTU id. We also got rid of the--asign-taxonomyalias option.