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microbiomeDB / microbiomeData

An R package containing all of the curated datasets from MicrobiomeDB.org
https://microbiomedb.github.io/microbiomeData/
Apache License 2.0
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Additional getCollection args needed #2

Closed d-callan closed 9 months ago

d-callan commented 9 months ago

We need a format arg similar to getComputeResult. the options could be things like 'Collection', 'AbundanceData', 'data.table', 'phyloseq'

We also need an arg to select continuous variables only, or maybe variables by predicate, for the sample metadata. this to support directly passing the resulting object to the correlation method for taxa X metadata correlations.