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microbiomedata / nmdc-schema

National Microbiome Data Collaborative (NMDC) unified data model
https://microbiomedata.github.io/nmdc-schema/
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Move v11.1 deprecated elements to deprecation.yaml #2257

Closed kheal closed 1 day ago

kheal commented 2 weeks ago

Per the deprecation guidelines, we should move the following deprecated slots and classes into the deprecated .yaml for the release following 11.1.

We should also remove any reference to these slots and classes from any of the yamls that are used to validate data (e.g. nmdc.yaml

From PR #2251 all_proteins best_protein min_q_value peptide_sequence peptide_spectral_count peptide_sum_masic_abundance peptide_sequence_count protein_spectral_count protein_sum_masic_abundance has_peptide_quantifications ProteinQuantification PeptideQuantification

From PR #2203 metagenome_anlaysis_id

kheal commented 1 week ago

@samobermiller - let's check in re: who has bandwidth to do this during the current sprint.