microbiomedata / nmdc-server

Data portal client and server for NMDC.
https://data.microbiomedata.org
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data portal dev - can't search by COG pathway name #1451

Closed aclum closed 1 week ago

aclum commented 2 weeks ago

Search by COG term works (COG0030) search by COG functional category works (Translation, ribosomal structure and biogenesis) search by COG pathway name does not work (16S rRNA modification)

example json from NCBI

"cog": {
"name": "rRNA adenine N6-methylase, includes 16S rRNA A1518 and A1519 N6-dimethyltransferase  RsmA/KsgA/DIM  and 23S rRNA A2058 N6-methylase ErmO/TlrD (may also have DNA glycosylase/AP lyase activity)",
"cogid": "COG0030",
"organism": 2251,
"proteins": 2589,
"genes": [
"RsmA"
],
"pdbs": [
"1QYR"
],
"pathways": [
"16S rRNA modification"
],
"pubmeds": [
16174779,
33462493
],
"funcats": [
{
"name": "J",
"color": "FCCCFC",
"description": "Translation, ribosomal structure and biogenesis",
"order": 0
}
]
}