Modularize Python API wrapper functions - Githubissues

microbiomedata / nmdc_notebooks

Jupyter Notebooks demonstrating R and Python-based access to NMDC metadata and data

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Modularize Python API wrapper functions #97

Open bmeluch opened 3 days ago

bmeluch commented 3 days ago

Currently, the taxonomy and NOM notebooks use functions for interacting with the NMDC API. The functions exist in https://github.com/microbiomedata/nmdc_notebooks/blob/main/NOM_visualizations/python/nmdc_api.py and https://github.com/microbiomedata/nmdc_notebooks/blob/main/taxonomic_dist_by_soil_layer/python/taxonomic_dist_soil_layer.ipynb, it would be better if they were collected into a module accessible by all Python notebooks in this repo.

Completion criteria:

[ ] A Python module exists in this repo including the API functions we have already been using
[ ] The existing notebooks use functions from the module
[ ] The module works with our requirements.txt (someone newly cloning the repo can get set up easily)