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mikeblazanin
/
gcplyr
gcplyr is an R package that facilitates wrangling and analysis of microbial growth curve data
https://mikeblazanin.github.io/gcplyr/
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rename first_peak to first_maxima; add first_minima function
#116
mikeblazanin
closed
1 year ago
1
peak_density plot in analyze vignette
#115
mikeblazanin
closed
1 year ago
1
Writing group 2023-02-03 vignettes feedback
#114
mikeblazanin
closed
1 year ago
1
Comment Style in Vignettes
#113
discoleo
closed
1 year ago
1
Vignettes: Broken on CRAN
#112
discoleo
closed
1 year ago
5
bug with find_threshold_crosses when it never crosses
#111
mikeblazanin
closed
1 year ago
1
bug with find_threshold_crosses and endpoints
#110
mikeblazanin
closed
1 year ago
1
first_above
#109
mikeblazanin
closed
1 year ago
1
Return handling when all values are NA for find_local_extrema and find_threshold_crosses
#108
mikeblazanin
closed
1 year ago
1
enable randomization of plate layouts in make_design
#107
mikeblazanin
opened
1 year ago
0
pre-compute vignettes?
#106
mikeblazanin
opened
1 year ago
0
tweak vignette header depths
#105
mikeblazanin
closed
1 year ago
1
make sure every function has a @value in documentation
#104
mikeblazanin
closed
1 year ago
2
change ~all uses of window_width_n to window_width in vignette
#103
mikeblazanin
closed
1 year ago
2
Rewrite derivs & smoothing section of vignette following new calc_deriv fitting functionality
#102
mikeblazanin
closed
1 year ago
5
NA handling in calc_deriv when trans_y = 'log'
#101
mikeblazanin
closed
1 year ago
2
Submit to CRAN
#100
mikeblazanin
closed
1 year ago
1
Update Description in DESCRIPTION
#99
mikeblazanin
closed
1 year ago
2
Transition find_local_extrema to use get_windows
#98
mikeblazanin
closed
1 year ago
2
Fourier for smoothing?
#97
mikeblazanin
closed
1 year ago
2
make pkgdown site
#96
mikeblazanin
closed
1 year ago
1
split up vignette into smaller sub-vignettes
#95
mikeblazanin
closed
1 year ago
2
some form of rolling regression for smoothing and/or deriv calculation?
#94
mikeblazanin
closed
1 year ago
3
Compare & potentially integrate with gpmodels and/or recipes packages
#93
mikeblazanin
opened
1 year ago
0
check dependencies for those that should be suggested
#92
mikeblazanin
closed
1 year ago
2
figure out why max percap in "when to average" section of vignette is above the set r = 0.02
#91
mikeblazanin
closed
1 year ago
2
find_local_extrema handling of ties
#90
mikeblazanin
closed
1 year ago
1
Expanded smooth_data methods and improved explanation of smoothing approaches
#89
mikeblazanin
opened
1 year ago
6
Add discussion of issues related to gam-added artifacts in derivatives
#88
mikeblazanin
closed
1 year ago
1
Update vignette to emphasize NA creation by smooth_data and calc_deriv
#87
mikeblazanin
closed
1 year ago
1
vignette tweaks for readability
#86
mikeblazanin
closed
1 year ago
1
Add vignette section on converting OD to cfu std curve
#85
mikeblazanin
opened
1 year ago
0
Change vignette to use mutate for smooth & deriv
#84
mikeblazanin
closed
1 year ago
2
gam basis error when passed in smooth_data
#83
mikeblazanin
closed
1 year ago
3
writing group 11-7-2022 fixes
#82
mikeblazanin
closed
1 year ago
1
add section on general principles for statistics on summarized data
#81
mikeblazanin
closed
1 year ago
2
change import_blockmeasures wellnames_sep to ""
#80
mikeblazanin
closed
1 year ago
1
add ordering and na.rm to find_local_extrema
#79
mikeblazanin
closed
1 year ago
1
Add how to combine fitting & non-fitting approaches
#78
mikeblazanin
opened
1 year ago
0
implement easier tuning of k for gam in smooth_data
#77
mikeblazanin
closed
1 year ago
2
use reorder() in calc_deriv
#76
mikeblazanin
closed
1 year ago
1
add NA handling to smooth_data and methods
#75
mikeblazanin
closed
1 year ago
1
Add arithmetic and exponential weighting to moving_average
#74
mikeblazanin
opened
1 year ago
0
Add auto-naming to unnamed metadata in read_blocks, read_wides
#73
mikeblazanin
opened
1 year ago
0
remove inferring metadata warning from import_blockmeasures
#72
mikeblazanin
closed
1 year ago
1
use sep_finder in import_blockdesigns
#71
mikeblazanin
closed
5 months ago
0
simplify read_blocks and read_wides sections by consolidating the "simple example" and "specifying location" sections together
#70
mikeblazanin
closed
1 year ago
1
additional discussion of "other analysis packages" in vignette
#69
mikeblazanin
opened
1 year ago
0
additional discussion of smoothing considerations in vignette
#68
mikeblazanin
opened
1 year ago
3
why does write_blocks sometimes write "" and sometimes writes NA
#67
mikeblazanin
closed
1 year ago
1
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