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milaboratory
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mixcr
MiXCR is an ultimate software platform for analysis of Next-Generation Sequencing (NGS) data for immune profiling.
https://mixcr.com
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Generating all all_contig_annotations.json to run enclone after MiXCR
#1700
JackYGhannam
closed
5 months ago
0
support `--output-not-used-reads` for bam files
#1699
gnefedev
closed
5 months ago
0
Rhapsody BCR+TCR full length data input
#1698
albertop210
closed
5 months ago
2
findAlleles get empty clone data
#1697
liu9756
closed
4 months ago
11
Help with TCR-seq alignment rate
#1695
seoyeonoh12
closed
5 months ago
0
Regression tests changes in the keepTags
#1693
github-actions[bot]
closed
5 months ago
0
add keepTags
#1692
gnefedev
closed
5 months ago
0
FASTQ and BAM give discordant results
#1691
vincentwalter
closed
4 months ago
6
allVHitsWithScore allDHitsWithScore allJHitsWithScore allCHitsWithScore
#1689
2061574124
closed
5 months ago
1
The majority of results in 'clones_TR[A|B].tsv' are "region_not_covered"
#1687
ChoiJi-Hye
closed
5 months ago
1
The problem of mixcr exportPlots shmTrees
#1686
WZQ6
closed
4 months ago
3
How to perform MiXCR on my spatial TCR data
#1684
yuyuleung
closed
4 months ago
1
Preset for long-read RNAseq with cell barcode
#1682
Euchiz
closed
5 months ago
1
fix field header
#1679
gnefedev
closed
6 months ago
0
Regression tests changes in the fix-trees
#1677
github-actions[bot]
closed
6 months ago
0
fix getNDN
#1676
gnefedev
closed
6 months ago
0
Question about filtering reads prior to Mixcr
#1674
SirKuikka
closed
6 months ago
1
Somatic Hypermutation Status of IGHV status
#1672
xmy1990
closed
6 months ago
2
Regression tests changes in the spike-in-controls-qc
#1671
github-actions[bot]
closed
4 months ago
0
update version
#1670
gnefedev
closed
6 months ago
0
transitioning from postanalysis to exportPlots
#1667
Januaryyiyue
closed
6 months ago
1
Error exportPlots shmTrees - Duplicate library: repseqio.v4.0_with_found_alleles:10090
#1666
pbpayal
closed
6 months ago
2
Regression tests changes in the fix-downsample
#1665
github-actions[bot]
closed
6 months ago
0
Fix downsample
#1664
gnefedev
closed
6 months ago
0
Regression tests changes in the fix-postanalyz
#1663
github-actions[bot]
closed
6 months ago
0
Fix postanalyz
#1662
gnefedev
closed
6 months ago
0
Regression tests changes in the spike-in-controls-qc
#1661
github-actions[bot]
closed
6 months ago
0
Analysis of single chain Fragment variable (scFv)
#1658
d-jch
closed
6 months ago
1
Spike-in controls QC support
#1657
PoslavskySV
closed
4 months ago
0
Somatic hypermutation analysis
#1656
pbpayal
closed
6 months ago
1
new library version
#1655
gnefedev
closed
6 months ago
0
postanalysis NullPointerException
#1654
Januaryyiyue
closed
6 months ago
9
Changed assembling feature for Archer BCR kit
#1653
mizraelson
closed
4 months ago
0
Regression tests changes in the archer-fix
#1652
github-actions[bot]
closed
6 months ago
0
For detection of somatic hypermutation (SHM) ?
#1648
xmy1990
closed
6 months ago
1
RefineTagsAndSort
#1646
bshim181
closed
6 months ago
1
Regression tests changes in the archer
#1645
github-actions[bot]
closed
6 months ago
0
archer kits
#1644
mizraelson
closed
6 months ago
0
4.7.0-RC plus mitool integration
#1643
gnefedev
closed
4 months ago
0
Regression tests changes in the rna-seq-with-umi-preset
#1642
github-actions[bot]
closed
1 week ago
0
Regression tests changes in the parse-weight-from-header
#1641
github-actions[bot]
closed
7 months ago
0
feat: enable sign archive
#1640
mike-ainsel
closed
7 months ago
0
fix cli
#1639
gnefedev
closed
7 months ago
0
Regression tests changes in the ont-preset
#1637
github-actions[bot]
closed
7 months ago
0
ont correction
#1636
Alex-Davydov
closed
7 months ago
0
UMI-based error correction
#1635
bshim181
closed
7 months ago
1
Number of aligned reads distinct between preset rna-seq and generic-amplicon-with-umi
#1634
AntonellaGuo
closed
6 months ago
1
TotalReads count not set
#1633
Januaryyiyue
closed
6 months ago
10
Regression tests changes in the 4-7-0-RC-plus-mitool-integration
#1632
github-actions[bot]
closed
4 months ago
0
Regression tests changes in the optional-correction-of-tags
#1631
github-actions[bot]
closed
7 months ago
0
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