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mitoNGS / MToolBox

A bioinformatics pipeline to analyze mtDNA from NGS data
http://sourceforge.net/projects/mtoolbox/?source=navbar
GNU General Public License v3.0
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multiple annotation.csv files #27

Closed ma-diroma closed 7 years ago

ma-diroma commented 7 years ago

The generation of multiple annotation.csv files for fragmented samples with lots of best predicted haplogroups causes issues in summary.txt generation.

domenico-simone commented 7 years ago

Which error is thrown? Can you post a seq file to reproduce it?

Il giorno mar 4 apr 2017 alle 12:25 Maria Angela Diroma < notifications@github.com> ha scritto:

The generation of multiple annotation.csv files for fragmented samples with lots of best predicted haplogroups causes issues in summary.txt generation.

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ma-diroma commented 7 years ago

Log:

No annotation.csv found. Exit

within the folder there are more than 4000 annotation.csv files. prioritized_variants.txt and summary.txt were not generated. Please find attached OUT2-sorted.bam file, generated by MToolBox map-exome OUT2-sorted.bam.zip

biowizz commented 7 years ago

Hello, I am facing the exact same issue. Did you resolve this issue?

clody23 commented 7 years ago

This issue should be now solved. Please git pull the new changes to your local installation of MToolBox.

Best, C