I am not very clear about the number of variants in summary file, which includes "N. of homoplasmic variants" "N. of heteroplasmic variants HF>=0.8" and "N. of heteroplasmic variants HF<0.8"
The readme file does not say anything about the definition for homoplasmic variants. Based on your paper (Bioinformatics 2014), "Sample-specific mitochondrial variant alleles associated to these mother-child pairs were grouped in three different bins of heteroplasmy: lowheteroplasmy (≤10%), heteroplasmy (>10% and <90%) and homoplasmy (≥90%)", does this mean, in the summary file, the homoplasmic variants are the variant with HF≥90%?
If this is correct, the "N. of heteroplasmic variants HF>=0.8", should be the N. of heteroplasmic variants 0.9>HF>=0.8, right?
I am not very clear about the number of variants in summary file, which includes "N. of homoplasmic variants" "N. of heteroplasmic variants HF>=0.8" and "N. of heteroplasmic variants HF<0.8"
The readme file does not say anything about the definition for homoplasmic variants. Based on your paper (Bioinformatics 2014), "Sample-specific mitochondrial variant alleles associated to these mother-child pairs were grouped in three different bins of heteroplasmy: lowheteroplasmy (≤10%), heteroplasmy (>10% and <90%) and homoplasmy (≥90%)", does this mean, in the summary file, the homoplasmic variants are the variant with HF≥90%? If this is correct, the "N. of heteroplasmic variants HF>=0.8", should be the N. of heteroplasmic variants 0.9>HF>=0.8, right?
Thanks