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mitoNGS / MToolBox

A bioinformatics pipeline to analyze mtDNA from NGS data
http://sourceforge.net/projects/mtoolbox/?source=navbar
GNU General Public License v3.0
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fa file doesnt exist #40

Closed jeffgreen123 closed 5 years ago

jeffgreen123 commented 7 years ago

I keep getting the following error whenever I try to run the HG00119 example

sudo MToolBox.sh -i HG00119.conf > HG00119.log

File (...)/MToolBox-master/genome_fasta/chrM.fa does not exist. Unable to compute haplogroup. Exit

While the folder genome_fasta has the file chrM.fa.gz, however that file is unable to be unzipped. Am I missing something or is there a bug?

Thanks.

PeggyHXY commented 7 years ago

You maybe not build genomes database successfully.

jeffgreen123 commented 7 years ago

Okay, I solved this, but now it keeps saying annotation.csv not found. Am I missing a file that I need?

clody23 commented 7 years ago

Hi @jeffgreen123

could you please copy-paste the full .log file here, to help us understanding the error?

thanks C