GSNAP command line improvement

mitoNGS / MToolBox

A bioinformatics pipeline to analyze mtDNA from NGS data

GNU General Public License v3.0

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Open clody23 opened 8 years ago

clody23 commented 8 years ago

use a single nu-mit GSNAP db and select the mitochondrial chr directly from this db (-c gsnap option)
use GMAP for reads>=250/300nt