Closed miwipe closed 2 years ago
Make ngsLCA output as Kaiju output file style (https://github.com/bioinformatics-centre/kaiju) that gives you the counts only for the lowest ranks, rather than Kraken2 or Metaphaln that sum up the counts to the highest ranks.
Which is compatible with Phyloseq (https://joey711.github.io/phyloseq/) and Mia (https://microbiome.github.io/OMA/).
ont_otu_table.csv
Make ngsLCA output as Kaiju output file style (https://github.com/bioinformatics-centre/kaiju) that gives you the counts only for the lowest ranks, rather than Kraken2 or Metaphaln that sum up the counts to the highest ranks.
Which is compatible with Phyloseq (https://joey711.github.io/phyloseq/) and Mia (https://microbiome.github.io/OMA/).
ont_otu_table.csv