Error in MN:i: parsing sequences with MN:i:1 and above have been parsed?

miwipe / ngsLCA

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Error in MN:i: parsing sequences with MN:i:1 and above have been parsed? #6

Closed miwipe closed 7 years ago

miwipe commented 7 years ago

see below parsed seqs which doesn't fit 100% to reference sequence

samtools view CHL_155_12485.sort.bam | grep -e 'HISEQ:50:C6NJJANXX:1:1108:14286:4677' -e 'HISEQ:50:C6NJJANXX:1:1108:14285:32643' -e 'HISEQ:50:C6NJJANXX:1:1108:14287:23673' -e 'HISEQ:50:C6NJJANXX:1:1108:14289:31539' -e 'HISEQ:50:C6NJJANXX:1:1108:14289:54817' | less -S

ANGSD commented 7 years ago

is fixed