ar.read_atlas_peak(atlastype) not working if atlastype is 'desikan_killiany' str

[pfdamasceno]

Hi all,

While using ar.read_atlas_peak(atlastype, coordinate, prob_thresh=5) to inquire the region a voxel belongs to, we noticed that the documentation suggests atlastype should be a str.

The following code doesn't not work:

ar.read_atlas_peak(“desikan_killiany”, [10,10,10])

while the code below does work:

ar.read_atlas_peak(ar.get_atlas("desikan_killiany"),[10,10,10])

This suggests atlastype should be the atlas itself, not a string. Is that correct? If so, let me know if a PR is needed or if one of you can fire a hot fix for the documentation...

Thanks.

ps: Congrats on shipping to JOSS =)

[miykael]

Hi @pfdamasceno,

Thank you for pointing this out. I've corrected the function (https://github.com/miykael/atlasreader/pull/110) so that it works now with "desikan_klilliany".

And thanks about the JOSS comment, we're very happy about it :-)

[miykael]

Updated version can be installed with pip install -U atlasreader