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mjsull / Easyfig

Development version of Easyfig
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Trouble with manually entering phage regions as described in tutorial example 2 #32

Open mattbird567 opened 4 years ago

mattbird567 commented 4 years ago

Hello,

I have just started using EasyFig and the example 2 in the handy tutorial is exactly what i want to achieve, i have several STEC sample and am looking to compare thier prophage regions to the sakai reference. However, when i try to add in the phage annotations to my GBK files i can't seem to get Easy Fig to recgnoise them. As far as i'm away i am adding them in at the same place as the example files but cannot get them to show as purple squares as they do in the example.

Any help would be greatly appreciated! Many thanks, Matt

mjsull commented 4 years ago

Hi Matt,

Usually when that happens it's because were used instead of spaces.

If that's not the case send me and email and I can check out what is going wrong.

Best,

Mitch

On Thu, 9 Jul 2020 at 21:02, mattbird567 notifications@github.com wrote:

Hello,

I have just started using EasyFig and the example 2 in the handy tutorial is exactly what i want to achieve, i have several STEC sample and am looking to compare thier prophage regions to the sakai reference. However, when i try to add in the phage annotations to my GBK files i can't seem to get Easy Fig to recgnoise them. As far as i'm away i am adding them in at the same place as the example files but cannot get them to show as purple squares as they do in the example.

Any help would be greatly appreciated! Many thanks, Matt

— You are receiving this because you are subscribed to this thread. Reply to this email directly, view it on GitHub https://github.com/mjsull/Easyfig/issues/32, or unsubscribe https://github.com/notifications/unsubscribe-auth/AAYTVBIGACQ3CHUARK6MKULR2WPTLANCNFSM4OVPODSQ .

mjsull commented 4 years ago

Sorry that should read "send me the file in an email".

On Thu, 9 Jul 2020 at 21:03, Mitchell Sullivan mjsull@gmail.com wrote:

Hi Matt,

Usually when that happens it's because were used instead of spaces.

If that's not the case send me and email and I can check out what is going wrong.

Best,

Mitch

On Thu, 9 Jul 2020 at 21:02, mattbird567 notifications@github.com wrote:

Hello,

I have just started using EasyFig and the example 2 in the handy tutorial is exactly what i want to achieve, i have several STEC sample and am looking to compare thier prophage regions to the sakai reference. However, when i try to add in the phage annotations to my GBK files i can't seem to get Easy Fig to recgnoise them. As far as i'm away i am adding them in at the same place as the example files but cannot get them to show as purple squares as they do in the example.

Any help would be greatly appreciated! Many thanks, Matt

— You are receiving this because you are subscribed to this thread. Reply to this email directly, view it on GitHub https://github.com/mjsull/Easyfig/issues/32, or unsubscribe https://github.com/notifications/unsubscribe-auth/AAYTVBIGACQ3CHUARK6MKULR2WPTLANCNFSM4OVPODSQ .

mattbird567 commented 4 years ago

Hi Mitch,

I sent you an email with my files attached as i couldn't seem to fix the problem by replacing tabs with spaces. Just wondering if yoy received it?

Many thanks,

Matt