mksamur RTCGAToolbox issues

mksamur / RTCGAToolbox

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issues

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Failed getFirehoseData with dataset "GBMLGG"

#45 andreagrioni closed 1 year ago
1
New Issue with getFirehoseData

#44 biostars-nyc closed 1 year ago
2
data set downloading error.

#43 ffeng23 closed 2 years ago
2
Cancer codes returned by getFirehoseDatasets()

#42 zhxiaokang closed 2 years ago
2
RNA-Seq normalized counts download

#41 zhxiaokang closed 3 years ago
1
Added on RNASeq2 gene level data

#40 LiNk-NY closed 4 years ago
0
RNASeqV2 raw count and scaled estimate (TPM) download

#39 mherberg closed 4 years ago
1
Exported expression matrix from firehose looks empty - DEG analysis

#38 Hulkk3000 closed 4 years ago
6
use BiocFileCache to cache files

#37 LiNk-NY opened 4 years ago
0
Proper documentation for each data type in `getFirehoseData`

#36 LiNk-NY closed 4 years ago
1
obtain the expression data in unit TPM

#35 dingying85 closed 4 years ago
3
GetFirehoseData not working due to github server error

#34 DavisWeaver closed 4 years ago
3
Unable to read

#33 namphuon closed 4 years ago
2
Move can evolve path to GitHub for cohort and date info

#32 mksamur closed 4 years ago
8
RaggedExperiment

#31 Dokmen closed 5 years ago
8
COAD samples do not have any normals

#30 LiNk-NY closed 5 years ago
3
RTCGAToolbox-File name too long

#29 cailiangliang765 closed 4 years ago
3
mirSeqData

#28 fk506cni closed 4 years ago
1
getSurvival() may results in a strange plot because sample types not filterd.

#27 Tyelcie closed 4 years ago
1
Error loading hg19.ucsc.gene.locations data

#26 asmagen closed 4 years ago
1
getDiffExpressedGenes can not plot heatmap of all gene，because of the “limma“ package update.

#25 cdy371761145 closed 4 years ago
1
Minor doc enhancements for getBroadSubtypes and getGISTICPeaks

#24 lgeistlinger closed 6 years ago
0
How to getData RAPP?

#23 cqneosun closed 6 years ago
2
getFirehoseData error: Error in file(name, "wb")

#22 cqneosun closed 4 years ago
6
getFirehoseData error: Error in dirname(name) : path too long

#21 JunzeChen closed 4 years ago
7
Multiple cancer types

#20 rg-code closed 6 years ago
4
Possible (ugly) fix for Windows path length errors

#19 bandrewfox opened 8 years ago
2
GetMutationRate

#18 aedin closed 4 years ago
0
Update index.html

#17 MarcinKosinski closed 6 years ago
0
Update RTCGAToolbox-vignette.Rmd

#16 MarcinKosinski closed 6 years ago
0
Version from bioconductor incompatible with R 3.2.2 version

#15 MarcinKosinski closed 7 years ago
1
Removed spurious runDate argument to .makeExprMat in miRNA_Array

#14 humberto-ortiz closed 7 years ago
0
inconsistencies between slot names and getFirehoseData arguments

#13 lwaldron closed 7 years ago
4
UUID function

#12 LiNk-NY closed 6 years ago
2
getFirehoseData silent defaults

#11 aaronwolen closed 7 years ago
1
Add destdir argument to getFirehoseData()

#10 aaronwolen closed 9 years ago
0
can't connect to server

#9 LiNk-NY closed 9 years ago
2
Read local data

#8 LiNk-NY closed 7 years ago
4
getFirehoseData creating blank object

#7 LiNk-NY closed 9 years ago
3
UUID - barcode converter

#6 lwaldron closed 9 years ago
5
maximum file size as argument

#5 LiNk-NY closed 9 years ago
1
clean up @Clinical slot data.frame (variables in columns with column names).

#4 lwaldron closed 9 years ago
0
What is the difference between CNV and CNA?

#3 lwaldron closed 9 years ago
1
Error in listMat[[i]] : subscript out of bounds

#2 lwaldron closed 9 years ago
2
Plotting survival data for RNAseq2GeneNorm does not work

#1 AmyOlex closed 10 years ago
2