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mlbendall / telescope

Quantification of transposable element expression using RNA-seq
MIT License
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KeyError #31

Open biostars-nyc opened 2 years ago

biostars-nyc commented 2 years ago

Traceback (most recent call last): File "/home/rkv7206/.conda/envs/telescope_env/bin/telescope", line 11, in load_entry_point('telescope-ngs==1.0.3', 'console_scripts', 'telescope')() File "/home/rkv7206/.conda/envs/telescope_env/lib/python3.6/site-packages/telescope/main.py", line 95, in main args.func(args) File "/home/rkv7206/.conda/envs/telescope_env/lib/python3.6/site-packages/telescope/telescope_assign.py", line 216, in run ts.load_alignment(annot) File "/home/rkv7206/.conda/envs/telescope_env/lib/python3.6/site-packages/telescope/utils/model.py", line 161, in load_alignment maps, scorerange, alninfo = self._load_sequential(annotation) File "/home/rkv7206/.conda/envs/telescope_env/lib/python3.6/site-packages/telescope/utils/model.py", line 249, in _load_sequential _scores = [a.alnscore for a in _mapped] File "/home/rkv7206/.conda/envs/telescope_env/lib/python3.6/site-packages/telescope/utils/model.py", line 249, in _scores = [a.alnscore for a in _mapped] File "telescope/utils/calignment.pyx", line 92, in telescope.utils.calignment.AlignedPair.alnscore.get File "pysam/libcalignedsegment.pyx", line 2443, in pysam.libcalignedsegment.AlignedSegment.get_tag KeyError: "tag 'AS' not present"