Perform a literature/software review.

[mleiwe]

Aim: Search for existing solutions that are similar so we can speed up the process

Estimate: 8hrs Deadline: 2024/04/10

[mleiwe]

Using Elicit I found a few useful papers

• New Similarity Metric for Registration of MRI to Histology: Golden Retriever Muscular Dystrophy Imaging
• Automating Whole Brain Histology to MRI Registration: Implementation of a Computational Pipeline
• Multi-modal image registration: matching MRI with histology
• Accuracy of image registration between MRI and light microscopy in the ex vivo brain.
• 3D reconstruction of 2D fluorescence histology images and registration with in vivo MR images: Application in a rodent stroke model
• Joint registration and synthesis using a probabilistic model for alignment of MRI and histological sections
• Three-dimensional reconstruction of stained histological slices and 3D non-linear registration with in-vivo MRI for whole baboon brain
• Challenges and Practical Solutions to MRI and Histology Matching and Measurements Using Available ImageJ Software Tools
• Automating Whole Brain Histology to MRI Registration: Implementation of a Computational Pipeline
• Tensor image registration library: Deformable registration of stand‐alone histology images to whole‐brain post‐mortem MRI data
• Tensor image registration library: Deformable registration of stand‐alone histology images to whole‐brain post‐mortem MRI data

[mleiwe]

Robust registration of sparsely sectioned histology to ex-vivo MRI of temporal lobe resections