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mmcdermott / MEDS-DEV

The MEDS Decentralized Extensible Validation (MEDS-DEV) Benchmark: Establishing Reproducibility and Comparability in ML for Health
MIT License
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UCLA DATA Predicates file #23

Closed Simonlee711 closed 3 weeks ago

Simonlee711 commented 1 month ago

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📥 Commits Reviewing files that changed from the base of the PR and between 065b20b2bb4a8cd1fa46990d6587bb3125dbf71b and f0b3af50bd7653da0b5384166eca938309c820eb.

Walkthrough

This pull request introduces several changes, including the addition of a new README.md file in the src/MEDS_DEV/datasets/UCLA/ directory, detailing datasets and associated tasks. It also updates the .gitignore file to include entries for macOS, PyCharm, Visual Studio Code, and Windows environments, enhancing its scope for ignored files. Additionally, a new section titled predicates is added to the predicates.yaml file, defining regex patterns for various hospital and emergency department operations.

Changes

File Path Change Summary
src/MEDS_DEV/datasets/UCLA/README.md New README.md file added outlining datasets and tasks related to the MEDS-DEV project.
.gitignore Updated to include rules for ignoring files and directories specific to macOS, PyCharm, Visual Studio Code, and Windows.
src/MEDS_DEV/datasets/UCLA/predicates.yaml New section added defining predicates with regex patterns for hospital and emergency department operations.

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mmcdermott commented 1 month ago

@Simonlee711 is this ready for review, or should we convert it to a draft for now? I'm going through outstanding PRs to make sure I'm not blocking anything that needs my review. If it is ready for review, go ahead and add me as a reviewer and try to fix the PR check that is failing. I'm happy to have a call to help you get that set up to run automatically on commit for you.

mmcdermott commented 1 month ago

@Simonlee711 if you fix the PR workflow errors this is likely ready to go in. Note you can set up pre-commit to run locally and automatically fix issues by installing pre-commit then running pre-commit install in the root dir.

kamilest commented 4 weeks ago

@Simonlee711 @mmcdermott I fixed the pre-commit errors.

Maybe we can merge this and then update later as per #31 (@Simonlee711 maybe you could also take a look at that PR to see if you have any suggestions for what information new dataset PRs should have, and see if UCLA dataset has that information available).