I have scATAC data, that I analysed using the Signac package.
Now, I have to convert my data into an h5ad one. I found some people, who proposed this:
library(SeuratDisk)
SaveH5Seurat(atac, filename = "atac.h5Seurat")
Convert("atac.h5Seurat", dest = "h5ad")
However, when I tried to save my object into h5Seurat, it returned an error.
Error in attr$write(robj) : HDF5-API Errors:
error #000: ../../../src/H5A.c in H5Awrite(): line 619: null attribute buffer
class: HDF5
major: Invalid arguments to routine
minor: Bad value
I already knew that a similar problem came out also for sc RNA data and it was solved by updating the object. I tried also that solution, but it didn't work.
Hello everyone!
I have scATAC data, that I analysed using the Signac package.
Now, I have to convert my data into an h5ad one. I found some people, who proposed this:
library(SeuratDisk) SaveH5Seurat(atac, filename = "atac.h5Seurat") Convert("atac.h5Seurat", dest = "h5ad")
However, when I tried to save my object into h5Seurat, it returned an error.
Error in attr$write(robj) : HDF5-API Errors: error #000: ../../../src/H5A.c in H5Awrite(): line 619: null attribute buffer class: HDF5 major: Invalid arguments to routine minor: Bad value
I already knew that a similar problem came out also for sc RNA data and it was solved by updating the object. I tried also that solution, but it didn't work.
Does anyone have the same problem?