"controlsDir" not used?

molgenis / CoNVaDING

Copy Number Variation Detection In Next-generation sequencing Gene panels was designed for small (single-exon) copy number variation (CNV) detection in high coverage next-generation sequencing (NGS) data

GNU Lesser General Public License v3.0

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"controlsDir" not used? #42

Open przemekl opened 5 years ago

przemekl commented 5 years ago

What does the following warning mean? "-controlsDir" is directly listed at https://molgenis.gitbooks.io/convading/#cnv-detection

COMMANDLINE OPTIONS IN AFFECT: -mode StartWithBestScore -inputDir dir1 -controlsDir dir2 -outputDir dir3

WARNING ##### WARNING

User specified parameter "controlsDir" not used in best score analysis.

WARNING ##### WARNING

ljohansson commented 5 years ago

You are correct. There is no need to use the -controlsDir option, since the file locations are specified in the startWithMatchScore output.