normally the output looked like this:
RLV_PRESENT=TRUE
now it is like this:
RLV_PRESENT=[T|ACADVL]TRUE
this [T|ACADVL] is the allele and Gene, and it is nice that the Gavin annotation will be done per allele/Gene combination but since our vcf's are already splitted per alternative allele per row this is not really necessary anymore and it is basically unusable at the moment.
Please add an option/parameter while running Gavin where i can turn this off
normally the output looked like this: RLV_PRESENT=TRUE
now it is like this: RLV_PRESENT=[T|ACADVL]TRUE
this [T|ACADVL] is the allele and Gene, and it is nice that the Gavin annotation will be done per allele/Gene combination but since our vcf's are already splitted per alternative allele per row this is not really necessary anymore and it is basically unusable at the moment.
Please add an option/parameter while running Gavin where i can turn this off