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The Monarch Initiative Helpdesk
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How do I download the results of a search in Monarch? #22

Closed nursatranscriptomine closed 4 years ago

nursatranscriptomine commented 4 years ago

I ran a search for a disease in Monarch and pulled up a list of genes, but don't see any way to download them for a downstream analysis - can you assist?

kshefchek commented 4 years ago

We're currently working on adding this feature to our app, the ticket to track this is here - https://github.com/monarch-initiative/monarch-ui/issues/278

In the meantime there are some workarounds, you can use our API to perform a disease-gene lookup, for example: https://api.monarchinitiative.org/api/bioentity/disease/MONDO:0010011/genes?rows=100&association_type=both

You can also prefix any URL with legacy to get tables with a TSV option, for example https://legacy.monarchinitiative.org/disease/MONDO:0010011#gene-causal

nursatranscriptomine commented 4 years ago

Thanks....appreciated