monarch-initiative / mondo-ingest

Coordinating the mondo-ingest with external sources
https://monarch-initiative.github.io/mondo-ingest/
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Bug: Synonym Sync: `-confirmed` has non-exact entries #687

Closed twhetzel closed 1 week ago

twhetzel commented 2 weeks ago

There are two Mondo terms where the Synonym Sync pipeline adds source evidence for a confirmed synonym where the Synonym Sync pipeline should not. These Mondo terms from the qc check are:

http://purl.obolibrary.org/obo/MONDO_0012817,Ewing sarcoma,NCIT:C7542,PNET of Thoracopulmonary region,MONDO:relatedTo
http://purl.obolibrary.org/obo/MONDO_0002514,hepatobiliary neoplasm,DOID:3117,hepatobiliary tumors,MONDO:mondoIsBroaderThanSource

These should be sorted out with high priority to resolve this issue, but it is not blocking the existing work on the Synonym Sync pipeline from being merged and getting into main. So #93 and #671 should be merged before working on this at this time.

joeflack4 commented 1 week ago

resolved by: