monarch-initiative / mondo-ingest

Coordinating the mondo-ingest with external sources
https://monarch-initiative.github.io/mondo-ingest/
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Bug: Empty `synonym_sync_combined_cases.robot.tsv` #691

Open joeflack4 opened 1 week ago

joeflack4 commented 1 week ago

Overview

For some reason this file is coming out blank at the end of running a build. And one time it had the text beep in it, which is Joe's way of playing a sound when a command has finished. Could be some strange piping issue.

Choices

Additional info

Background:

This time it did not have the text beep. It is just empty, with 3 lines. I will interrogate the makefile, etc.

What's strange is that in a previous build when we got just beep in the file, I re-ran sh run.sh make sync-synonyms (I believe that's what I ran), and it created this file with no problem.

FYI, when I ran this build, I did as is always my protocol now: fresh clone + sh run.sh make build-mondo-ingest -B