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monarch-initiative
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pyphetools
Python Phenopacket Tools
https://monarch-initiative.github.io/pyphetools/
MIT License
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Develop
#121
pnrobinson
closed
1 month ago
0
Add validation against json-schema or protobuf
#120
cmungall
opened
1 month ago
1
broken links in docs
#119
cmungall
opened
1 month ago
0
Fix incorrectly merged PR for issue 114
#118
ielis
closed
1 month ago
0
Handle the network-dependent tests in a special way
#117
ielis
opened
1 month ago
0
Added ability to use FastHPOCR instead of exact string matching. Refa…
#116
tudorgroza
closed
1 month ago
3
Adding installation guide.
#115
cmungall
closed
1 month ago
8
Add installation instructions
#114
cmungall
closed
1 month ago
0
Consider using pydantic
#113
cmungall
closed
1 month ago
3
output tables from collections of phenopackets
#112
pnrobinson
opened
1 month ago
0
improve documentation for how to enter SVs
#111
pnrobinson
closed
1 month ago
2
The template can be downloaded here.
#110
pnrobinson
opened
2 months ago
0
throw exception if individual_id is empty
#109
pnrobinson
closed
1 month ago
1
biocurator not being added to inheritance line
#108
pnrobinson
closed
1 month ago
1
biocurator
#107
pnrobinson
closed
1 month ago
3
Adding check for existing template.
#106
KyranWissink
closed
2 months ago
0
template creation pulls in multiple terms
#105
pnrobinson
closed
1 month ago
1
Develop
#104
pnrobinson
closed
3 months ago
0
Develop
#103
pnrobinson
closed
3 months ago
0
remove superfluous output, see TBX5
#102
pnrobinson
closed
3 months ago
1
TBX1
#101
pnrobinson
closed
3 months ago
1
AgeColumnMapper.preview_column(
#100
pnrobinson
closed
3 months ago
1
Start working on `vrs` members.
#99
ielis
closed
3 months ago
0
Finalize convenience classes for Phenopacket Schema v2.0.2
#98
ielis
closed
3 months ago
0
Missing requirement: setuptools
#97
hansenp
closed
1 month ago
4
Develop
#96
pnrobinson
closed
3 months ago
0
Figure out if we can run the documentation as doctest script
#95
ielis
opened
3 months ago
0
Develop
#94
pnrobinson
closed
3 months ago
0
Allinone
#93
pnrobinson
closed
3 months ago
0
Improve ergonomics
#92
ielis
closed
3 months ago
2
module 'pyphetools.creation' has no attribute 'create_hpoa_from_phenopacketsIndividual'
#91
pnrobinson
closed
1 month ago
1
Allinone
#90
pnrobinson
closed
3 months ago
2
Setup CI for generating phenopackets
#89
ielis
closed
3 months ago
0
Work on plotting functions
#88
ielis
opened
3 months ago
0
Stabilize generating HPOA files from a phenopacket cohort
#87
ielis
closed
1 month ago
1
Improve ergonomics
#86
ielis
closed
3 months ago
1
Setup CI
#85
ielis
opened
3 months ago
5
Develop
#84
pnrobinson
closed
4 months ago
0
Refactor HpTerm
#83
pnrobinson
closed
3 months ago
1
Refactor OnsetCalculator
#82
pnrobinson
closed
1 month ago
1
Remove CaseEncoder
#81
pnrobinson
closed
3 months ago
1
from_ga4gh_phenopacket
#80
pnrobinson
closed
3 months ago
1
allow HPO onset terms for disease onset. Also add a column for age at last observation
#79
pnrobinson
closed
4 months ago
1
Develop
#78
pnrobinson
closed
4 months ago
0
FBN1 Katzke
#77
pnrobinson
closed
4 months ago
1
No such file or directory -- thresholds.tsv
#76
pnrobinson
closed
5 months ago
2
Develop
#75
pnrobinson
closed
5 months ago
0
PhenopacketTable -- def from_individuals(individual_list:List[Individual], metadata:MetaData):
#74
pnrobinson
closed
5 months ago
1
Develop
#73
pnrobinson
closed
5 months ago
0
It would be useful to have prefabricated ThresholdColumnMapper objects.
#72
pnrobinson
closed
5 months ago
1
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