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moosa-r / rbioapi

rbioapi: User-Friendly R Interface to Biologic Web Services' API
https://rbioapi.moosa-r.com/
GNU General Public License v3.0
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Connection refused issue #10

Closed justwalking2017 closed 1 year ago

justwalking2017 commented 1 year ago

Hi there,

Last month I run rbioapi smoothly on my laptop. But for last four days, every time I run rba_panther_enrich() I got an error even use the test input:

rba_panther_enrich(genes = c("p53", "BRCA1", "cdk2", "Q99835", "CDC42", "CDK1", "KIF23", "PLK1", "RAC2", "RACGAP1"), organism = 9606, annot_dataset = "GO:0008150", cutoff = 0.01)

Performing over-representation enrichment analysis of 10 input genes of organism 9606 against GO:0008150 datasets. Error: Failed to connect to www.pantherdb.org port 80: Connection refused

R is 4.2.2 and rbioapi is 0.7.9.

Have I been blocked? The analysis is somehow a bit of a hurry. Any comments and suggestions appreciate!

Thanks, Bohu

moosa-r commented 1 year ago

Hi Bohu,

Thank you for reporting this issue. It is because PANTHER moved their API URL to HTTPS. I made a minor fix to reflect this change. You can reinstall rbioapi with the latest fix using the following commands: (I will submit it to CRAN when some changes accumulate)

install.packages("remotes")
remotes::install_github("moosa-r/rbioapi")

Best, Moosa

justwalking2017 commented 1 year ago

Hi Moosa,

It works. Appreciate your prompt help！

Best Regards, Bohu