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morris-lab
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CellOracle
This is the alpha version of the CellOracle package
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Failed to load celloracle
#171
YuchenXiangEMBL
opened
10 months ago
2
AttributeError following co.data_conversion.seurat_object_to_anndata(
#170
A-legac45
closed
10 months ago
1
More than 3000 genes
#169
sarah-chapin
opened
11 months ago
1
Is CellOracle suitable for analysing cross-organ development for the same cell type?@JiaGuangshuai
#168
Counts-Xin
opened
11 months ago
0
gene selection from loaded seurat object
#167
A-legac45
closed
11 months ago
3
visualization error layout
#166
A-legac45
closed
10 months ago
1
Could you implement the genome of Parasteatoda tepidariorum as well, please?
#165
unaginekomoyashi
opened
1 year ago
0
Is it possible to adjust the clustering information of all cells to the same value in order to investigate the feasibility of identifying regulons?
#164
liuzj039
opened
1 year ago
0
oracle.suggest_mass_thresholds()
#163
yiqisu
opened
1 year ago
1
CellOracle KO simulation produced results opposite to real KO results
#162
Sustella
opened
1 year ago
0
Error in Oracle.get_Links
#161
debashish19211
closed
1 year ago
2
Cannot make plots after importing celloracle
#160
pavsol
opened
1 year ago
3
about simulated expression
#159
Lipxiao
closed
1 year ago
1
ImportError: cannot import name 'default_motifs' from 'gimmemotifs.motif'
#158
acv21
opened
1 year ago
6
30k genes were found in the adata. Note that Celloracle is intended to use around 1000-3000 genes, so the behavior with this number of genes may differ from what is expected.
#157
MariaRosariaNucera
opened
1 year ago
0
TF Binding Motif Scan not consistently working
#156
scongrove
closed
1 year ago
1
Please help with reproduing the zebrafish analysis
#155
bitcometz
opened
1 year ago
0
error when loading oracle data
#154
heroineray
opened
1 year ago
1
Could you please provide the processed Zebrafish scRNA-seq data？
#153
bitcometz
opened
1 year ago
0
could you please add available reference genome of Macaca
#152
chenc327
opened
1 year ago
4
Can we annotate TSS using scATAC-seq datasets?
#151
yangjun9095
opened
1 year ago
1
Update Dockerfile
#150
DongzeHE
closed
8 months ago
0
Why does the miniconda directory live in `/root` in the docker image?
#149
DongzeHE
opened
1 year ago
2
Is celloracle supporting any gene pertutation beside TF genes?
#148
bitcometz
closed
1 year ago
2
IndexError from get_links()
#147
mindproof24
closed
1 year ago
2
About the benchmarking datasets
#146
Chen-Li-17
closed
1 year ago
2
plot_mc_results_as_kde error
#145
iwanorittks
opened
1 year ago
2
Query: Prepare base GRN construction with ArchR
#144
HElias01
closed
1 year ago
1
Non-uniform simulate_shift
#143
aaposaav
opened
1 year ago
0
inferring cell types from markers instead of preassigned cell types
#142
janursa
closed
1 year ago
4
Bug or common? How to find the parameters for n_grid and min_mass?
#141
Zhuang-Bio
closed
1 year ago
2
installation error
#140
heroineray
closed
1 year ago
2
I want to know how to load data
#139
YuyaOsada
closed
1 year ago
0
ImportError: dlopen: cannot load any more object with static TLS
#138
LJK1991
opened
1 year ago
2
Docker pull command error
#137
dylanmmarshall
closed
1 year ago
2
Perturbation scores for individual cells.
#136
aaposaav
closed
1 year ago
2
How to process multiple Bulk ATAC-seq datasets?
#135
Crorazon
opened
1 year ago
2
oracle.get_mcmc_cell_transition_table
#134
debashish19211
opened
1 year ago
0
Problems importing celloracle to python
#133
aaposaav
closed
1 year ago
2
How to compare degree value of each gene between clusters?
#132
Roger-GOAT
opened
1 year ago
0
install error
#131
smilesw
closed
1 year ago
1
Error when pulling the latest docker image
#130
officialprofile
closed
1 year ago
1
oracle.to_hdf5 killed the proccess
#129
DLGisch
opened
1 year ago
0
Loading peaks.bed
#128
Jokendo-collab
opened
1 year ago
0
List of top 30 genes from each centrality measure
#127
mtrebelo
opened
1 year ago
0
No convergence error
#126
Jokendo-collab
closed
1 year ago
4
Problems with reference genome for construction of base GRN from scATAC data
#125
rickycolman
closed
1 year ago
5
Request of Rice genome
#124
Lidw2020
opened
1 year ago
0
Availability of tissue- or cell-type-specific ground-truth networks
#123
dburkhardt
opened
1 year ago
0
https://celloracle.org is not accessible
#122
dburkhardt
closed
1 year ago
0
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