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morrislab / phylowgs

Application for inferring subclonal composition and evolution from whole-genome sequencing data.
GNU General Public License v3.0
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Improved documentation for output #79

Closed jounikuj closed 6 years ago

jounikuj commented 6 years ago

Hi, I have used PhyloWGS for my targeted sequencing data and received very interesting results with it so far - so thank you for a great tool! So far I have used the "best tree" as described in https://github.com/morrislab/phylowgs/issues/61 as I don't fully understand how to interpret the output results of PhyloWGS. The documentation of the output seems to be more or less inadequate in this case. I would be more than happy if you could clarify what following abbreviations in the output mean;

nlgLH, seems to be natural logarithm of the likelihood? LI = ? BI = ?

Thank you in advance! -Jouni

jwintersinger commented 6 years ago

Hi! We just wrote a README that addresses your questions. Let us know if we can clarify anything!