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motleystate
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moonstone
Library to perform Metagenomics data analysis with Python
https://moonstone.readthedocs.io/en/latest/?badge=latest
MIT License
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Update to python 3.11 and 3.12
#105
AgnesBaud
opened
7 months ago
2
Divide samples into multiple groups following trendlines
#104
AgnesBaud
closed
8 months ago
1
Fixing documentation
#103
AgnesBaud
closed
10 months ago
1
101 pval selection
#102
AgnesBaud
opened
12 months ago
1
P-value selection
#101
AgnesBaud
opened
1 year ago
0
Metaphlan parser: deal with other analysis_type
#100
AgnesBaud
opened
1 year ago
0
Minor error debugging and some new features
#99
AgnesBaud
closed
12 months ago
1
Adapt Phylogenetic Tree to count dataframe
#98
AgnesBaud
closed
1 year ago
1
Utils to adapt phylogenetic tree to count dataframe
#97
AgnesBaud
closed
1 year ago
0
more format available to parse
#96
AgnesBaud
closed
2 years ago
0
Autoclass not working in documentation
#95
AgnesBaud
opened
2 years ago
1
Reformulate import instructions in documentation
#94
AgnesBaud
closed
10 months ago
2
Added a means to validate sample column,
#93
skennedy8
closed
2 years ago
0
Satistical tests reorganization
#92
AgnesBaud
closed
7 months ago
1
Removing redundancy between statistical_test/differential_analysis
#91
AgnesBaud
closed
7 months ago
4
Questions about organizational consistency
#90
AgnesBaud
opened
2 years ago
0
Refactoring and bug fixing in PlotTaxonomyCounts
#89
AgnesBaud
closed
2 years ago
1
Update documentation #1
#88
AgnesBaud
closed
2 years ago
1
Refactoring and bug fixing in PlotTaxonomyCounts
#87
AgnesBaud
closed
2 years ago
3
Diversity analyses: Group by 2 metadata variables
#86
AgnesBaud
closed
2 years ago
1
Allow to group by two metadata variables
#85
AgnesBaud
closed
2 years ago
2
Discussion: Return fig
#84
AgnesBaud
closed
2 years ago
0
Add plotting options to sample composition graphs
#83
AgnesBaud
closed
2 years ago
1
Pass skbio arguments to compute_diversity methods
#82
AgnesBaud
opened
3 years ago
0
Refactoring and addition of options in Phylogenetic Diversity classes
#81
AgnesBaud
closed
2 years ago
0
Adding options to Phylogenetic Diversity classes
#80
AgnesBaud
closed
2 years ago
0
PCoA Plotly Plotting from combined counts-metadata DF
#79
skennedy8
opened
3 years ago
1
Fix title and number of top species in samples composition plot
#78
AgnesBaud
closed
3 years ago
1
add marker_color option for BoxGraph
#77
khillion
closed
3 years ago
0
add setter for parsers
#76
khillion
closed
3 years ago
1
Faith's PD + UniFrac
#75
AgnesBaud
closed
3 years ago
1
Faith's Phylogenetic Diversity and UniFrac
#74
AgnesBaud
closed
3 years ago
0
Add plotting options to sample composition graphs
#73
AgnesBaud
closed
2 years ago
0
Built in visualization for taxonomy counts
#72
khillion
closed
3 years ago
1
Quick visualization for taxonomy counts
#71
khillion
closed
3 years ago
0
Small fixes and additional options
#70
AgnesBaud
closed
3 years ago
1
add group counts for group Box
#69
khillion
closed
3 years ago
1
fixes bug with np.nan in BetaDiversity
#68
AgnesBaud
closed
3 years ago
1
Bug in _get_grouped_df because np.nan != np.nan
#67
AgnesBaud
closed
3 years ago
0
adaptation of metaphlan3 parser
#66
AgnesBaud
closed
3 years ago
1
Simplify documentation
#65
khillion
opened
3 years ago
2
Create parallel category graph in plot module
#64
khillion
opened
3 years ago
0
Visualize continue metadata with distplot
#63
khillion
opened
3 years ago
0
Visualize metadata cat
#62
khillion
closed
3 years ago
2
Correction of error in NamesFiltering due to pandas deprecation
#61
AgnesBaud
closed
3 years ago
1
start parser for metaphlan3
#60
khillion
closed
3 years ago
2
Bug in NamesFiltering due to a deprecation in pandas
#59
AgnesBaud
closed
3 years ago
0
Add plotting module for number of reads in a data set
#58
skennedy8
closed
3 years ago
3
pvalue correction in analyse groups
#57
AgnesBaud
closed
3 years ago
2
add HeatmapGraph
#56
khillion
closed
3 years ago
3
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