Read name length exceeded

mozack / abra

Assembly Based ReAligner

MIT License

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Read name length exceeded #3

Closed Gig77 closed 10 years ago

Gig77 commented 10 years ago

I ran into the following problem on my data set:

Warning! Max SAM Read name length exceeded for: HWI-ST815_0101:6:2306:5037:35967#108C 83 1 31245039 60 100M = 31244887 -252 * * BD:Z:LMNMMOQPNPNMOPOOOMONONNLLJMLCKMJNNMLLKMJIMMMLKJJKKIKKLHLMGLLLMNKMLIKKLKMKLLLLNLALOMDMQPMPMNQRTRRKKJJ RG:Z:108C.BSF_0050_D2BYKACXX.6

Can this warning be safely ignored or is this a problem that needs to be fixed? If it can be ignored, can I somehow suppress this warning such that it does not fill up my log file?

mozack commented 10 years ago

Yes, that can be safely ignored. The log file is far too verbose at the moment. I'll start to clean things up in an upcoming release.

No way to turn it off in the software right now, but you could apply grep -v "Max SAM Read name length exceeded" to stdout to wittle things down a bit for the time being.

mozack commented 10 years ago

Message removed in v0.78