issues
search
mritchielab
/
FLAMES
A framework for performing single-cell and bulk read full-length analysis of mutations and splicing.
https://mritchielab.github.io/FLAMES/
GNU General Public License v3.0
17
stars
9
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
question on UMI deduplication step
#46
sparthib
opened
2 days ago
3
update basilisk env: add minimap2, samtools
#45
ChangqingW
closed
2 days ago
0
clarification on Isoform quantification parameters and output
#44
sparthib
opened
5 days ago
3
Defining custom parameters in the config file
#43
vsuppiyar
opened
1 month ago
2
FLAMES path
#42
vsuppiyar
closed
1 month ago
4
Assigning reads to genes stuck with 3 genes left
#41
ljwharbers
opened
2 months ago
1
UMI usage in genotyping
#40
maxim-h
closed
2 months ago
3
Fix GFF parser for gencode
#39
maxim-h
closed
2 months ago
1
Integrate Bambu results for multiple samples
#38
koehlek99
opened
2 months ago
2
Error with reading gene annotation file
#37
sparthib
closed
2 months ago
3
Visualizations
#36
vasikara17
closed
20 hours ago
3
Error starting the FLAMES pipeline
#35
vasikara17
closed
1 month ago
8
blaze dependency
#34
nick-youngblut
opened
3 months ago
3
find_isoform error
#33
nick-youngblut
opened
4 months ago
4
Isoform category quantification
#32
lscdanson
closed
4 months ago
4
Error: _Map_base::at
#31
nick-youngblut
opened
5 months ago
10
FileNotFoundError: matched_reads.fastq
#30
nick-youngblut
opened
5 months ago
8
'asBam' failed to open SAM/BAM file
#29
nick-youngblut
closed
5 months ago
5
Manually setting threads
#28
nick-youngblut
closed
5 months ago
3
no transcript id
#27
nick-youngblut
closed
5 months ago
3
Could not locate k8 and/or paftools.js in the minimap2 folder, they are required for converting annotation to bed12 files
#26
nick-youngblut
closed
5 months ago
13
The makeTxDb*() functions have moved from GenomicFeatures to txdbmaker
#25
hpages
closed
6 months ago
1
quesetion about combinesce
#24
yuanwsy
closed
5 months ago
5
feature request: better samtools dependency handling
#23
nick-youngblut
closed
5 months ago
1
Update cutadapt.R to fix broken cutadapt syntax
#22
felixradtke
closed
7 months ago
0
Error: with minimap2 alignment and samtools
#21
drafzalsyed
closed
6 months ago
3
Error in locating minimap2
#20
sh0rt2l0ng
closed
3 months ago
5
Include gene name in mutation calling output file
#19
HenriettaHolze
closed
5 months ago
1
not detecting .bai in directory
#18
m-noonan
closed
6 months ago
2
Update the vignette of `create_config` function
#17
youyupei
closed
5 months ago
1
use with ONT workflow?
#16
m-noonan
closed
5 months ago
22
Please update vignette
#15
HenriettaHolze
closed
9 months ago
2
Set `StagedInstall: no` in `DESCRIPTION`
#14
waddella
closed
11 months ago
2
Installation issue on Debian 11
#13
HaraldWilhelmi
closed
11 months ago
1
C++ find_isoform with multithreading
#12
OliverVoogd
closed
6 months ago
1
Running Multisample pipeline
#11
mcortes-lopez
closed
6 months ago
1
Mutation function
#10
mcortes-lopez
closed
6 months ago
1
creats_se_from_dict annotation isn't optional
#9
brianFSM
closed
1 year ago
0
C++copy to fix git merge issue
#8
OliverVoogd
closed
2 years ago
0
compilation fails on aarch64 / arm64
#7
kevinushey
closed
1 year ago
5
Update sc_mutations.R
#6
LuyiTian
closed
3 years ago
0
please fix DESCRIPTION
#5
vjcitn
closed
3 years ago
1
update document
#4
LuyiTian
closed
3 years ago
0
update description
#3
LuyiTian
closed
3 years ago
0
Building vignette during package installation failure
#2
PeteHaitch
closed
3 years ago
1
R CMD check fixes
#1
OliverVoogd
closed
3 years ago
0