Gene-level counts from sc_long_pipeline

mritchielab / FLAMES

A framework for performing single-cell and bulk read full-length analysis of mutations and splicing.

https://mritchielab.github.io/FLAMES/

GNU General Public License v3.0

20 stars 9 forks source link

Gene-level counts from sc_long_pipeline #51

Open ghowitt opened 1 week ago

ghowitt commented 1 week ago

Hello,

After running run sc_long_pipeline I have a SingleCellExperiment object with each row representing a transcript. I'd like to also have the corresponding gene-level counts in the same object, and was wondering if there is an option to include this as part of the output of the pipeline?