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mscook
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SeqFindR
A tool to easily create informative genomic feature plots
http://mscook.github.io/SeqFindR/
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Bump wheel from 0.24.0 to 0.38.1
#60
dependabot[bot]
opened
1 year ago
0
Bump numpy from 1.8.1 to 1.22.0
#59
dependabot[bot]
opened
2 years ago
0
Bump numpy from 1.8.1 to 1.21.0
#58
dependabot[bot]
closed
2 years ago
2
Switched broken pypip.in badges to shields.io
#57
movermeyer
opened
6 years ago
0
Prints out line that is not formatted correctly.
#56
bawee
closed
8 years ago
0
Correction of cutoff scoring function
#55
nbenzakour
closed
8 years ago
3
Figure plotting function now has the matrix fully in svg format
#54
nbenzakour
closed
9 years ago
2
(possibly redundant), remind user when db size >= pixels
#53
mscook
opened
9 years ago
0
Split out list of categories colors
#52
mscook
opened
9 years ago
0
Local packages not always installed in ~/.local/
#51
BioMinnie
opened
9 years ago
0
SeqFindr-web compatibility and support for other fasta formats.
#50
jling90
opened
9 years ago
1
Added support for alternative fasta file formatted inputs.
#49
jling90
closed
9 years ago
2
Clustering by column should work when providing an index.
#48
mscook
opened
9 years ago
0
Give the user options to set the the clustering algorithm
#47
mscook
opened
9 years ago
0
Write out matrix with labels
#46
mscook
opened
9 years ago
0
Read in results/matrix without needing to re-run!
#45
mscook
opened
9 years ago
1
Add uniqueness to all output (nice names) so don't get overwritten!
#44
mscook
opened
9 years ago
0
Handle cases where matrix is very simple (& cannot be clustered)
#43
mscook
opened
9 years ago
1
Warn user if all values in the matrix are equal
#42
mscook
closed
9 years ago
0
Checking for a singular matrix (i.e no hits/all hits)
#41
mscook
closed
9 years ago
1
underscores in input filesnames/directories
#40
mscook
opened
9 years ago
0
Combine HSP to make pseudo-hit
#39
mscook
opened
9 years ago
0
Hit shading by identity/score
#38
mscook
opened
9 years ago
0
Get Jun's "simple database header" code into master
#37
mscook
opened
9 years ago
0
Option to translate & cdhit for "closely related" genes
#36
mscook
opened
9 years ago
0
Option remove "empty" columns
#35
mscook
closed
9 years ago
0
Provide a single executable (pyinstaller)
#34
mscook
opened
10 years ago
0
Invert coloring
#33
mscook
closed
10 years ago
0
We have y axis label offset by 1 in current release!
#32
mscook
closed
10 years ago
1
General clarification requests to be integrated in the tutorial
#31
areejalsheikh
closed
10 years ago
0
Add an option to build DB with sequences that have a non-standard format header
#30
nbenzakour
closed
10 years ago
1
Stashed some changes - not sure why...
#29
mscook
opened
10 years ago
0
database validator
#28
mscook
opened
10 years ago
1
Clustering of the x-axis if the index is provided.
#27
bawee
closed
9 years ago
4
Save data, regen data & compress matrix
#26
hamzakhanvit
closed
10 years ago
0
Significant API changes to SeqFindR
#25
hamzakhanvit
closed
10 years ago
1
Issue with categories
#24
mscook
closed
10 years ago
1
Added all authors
#23
hamzakhanvit
closed
10 years ago
0
Output stats of blast hits
#22
bawee
closed
10 years ago
2
Enforce latest version of pip
#21
mscook
closed
10 years ago
1
Distribute in a docker container
#20
mscook
closed
10 years ago
1
Add shields
#19
mscook
closed
10 years ago
0
Cannot split a category
#18
happykhan
closed
10 years ago
2
Travis-CI build system
#17
mscook
closed
10 years ago
2
Fixed plot_matrix, svg works now.
#16
happykhan
closed
10 years ago
1
Offset x & y axes
#15
mscook
closed
10 years ago
1
matplotlib install on pip requires freetype
#14
happykhan
closed
10 years ago
2
Unique gene requirement names should just be a warning.
#13
bawee
closed
10 years ago
2
Updated installer & added svg
#12
happykhan
closed
10 years ago
1
OSx install issues
#11
mscook
closed
11 years ago
3
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