Can I force the ploidy to a specific value (experimentally validated) in facets?

mskcc / facets

Algorithm to implement Fraction and Copy number Estimate from Tumor/normal Sequencing.

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Can I force the ploidy to a specific value (experimentally validated) in facets? #156

Open Francesc-Muyas opened 3 years ago

Francesc-Muyas commented 3 years ago

Hi, I have some human cell line data whose original ploidy is not 2n. In fact, it is 4n. Is there any way to force the ploidy to this value when running facets in this sample? With that, I expect to have the real TCN of the cell for each chromosome.

Thanks