Dockerhub Container: mskcc/neoantigenediting:1.0
command: python /usr/bin/align_neoantigens_to_IEDB.py
The workdir needs to have the input in a data folder of the structure
data/id_1/id_2/Patient_data
where id_1 can be the patient and id_2 can be the sample id
Dockerhub Container: mskcc/neoantigenediting:1.0 command: python /usr/bin/align_neoantigens_to_IEDB.py The workdir needs to have the input in a
data
folder of the structuredata/id_1/id_2/Patient_data
where id_1 can be the patient and id_2 can be the sample id
and
data/iedb.fasta
see https://github.com/LukszaLab/NeoantigenEditing/tree/main/data