Open nikhil opened 7 months ago
https://genomebiology.biomedcentral.com/articles/10.1186/s13059-023-03005-9
For neoantigens from Structural Variants
I dont know if we have anything on agretopicity (ratio of mutant vs. wild-type peptide binding affinities) but previous tool we used developed by CCS is https://github.com/mskcc/agReto
There are many neoantigen tools and pipelines out there.
Let's investigate these tools and consider adding them so ours can be the best!
Add all tools/pipelines of interest to the document here: https://docs.google.com/document/d/11fAqBiD9bKB4pUB79kjiwxL3GzQpzl1852vHlBNRPdU/edit