mskcc / tempo

CCS research pipeline to process WES and WGS TN pairs
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replace or upgrade delly #1011

Open anoronh4 opened 6 months ago

anoronh4 commented 6 months ago

Delly is consistently very slow for certain samples, specifically WGS samples, especially if they are high coverage or have a lot of alterations. Currently we are running v0.8.2. We might consider to upgrade this or replace with another caller such as lumpy or gridss.