1) In line 57, all workflows should be lowercase, for example germSV won't work because the following lines are testing for germsv
2) in line 68 the mutsig option should not turn on the lohhla workflow.
We can continue to track any similar minor issues here.
this issue is to track minor some minor bugs in the workflow logic in dsl2.nf: https://github.com/mskcc/tempo/blob/develop/dsl2.nf#L57-L73
1) In line 57, all workflows should be lowercase, for example
germSVwon't work because the following lines are testing forgermsv2) in line 68 themutsigoption should not turn on the lohhla workflow.We can continue to track any similar minor issues here.