Open gongyixiao opened 2 years ago
When sample name is different in the header, SomaticCombineMutect2Vcf 's bcftools concat will give the following error:
SomaticCombineMutect2Vcf
bcftools concat
Error: subset called for sample that does not exist in header: "some sample name". Use "--force-samples" to ignore this error.
I think we can add --force-samples for all, since i don't see the value of this check in TEMPO so far. No harm to do I think.
--force-samples
When sample name is different in the header,
SomaticCombineMutect2Vcf'sbcftools concatwill give the following error:I think we can add
--force-samplesfor all, since i don't see the value of this check in TEMPO so far. No harm to do I think.