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mskcc / tempo

CCS research pipeline to process WES and WGS TN pairs
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Fixed facets zygosity annotation of maf #987

Closed anoronh4 closed 11 months ago

anoronh4 commented 1 year ago

Closes #967

it also occurred to me that the cncf input files are not necessary for annotation as well, so i removed those files. cncf info should be in the Rdata.

johnoooh commented 11 months ago

"I looked through this. I couldn’t quite follow the coding, but I agree with the theory behind it. When we annotate mutations with FACETS, it should be hisens because we’re looking at very focal events. Purity runs are best for broad-scale calculations: purity, FGA, arm-level, etc"